Sunday, June 24, 2012

Monterey and Santa Cruz

As usual, I had a pretty uneventful week. Just the usual work in lab, plus GRE prep, and three different seminars. Wednesday we had a graduate student panel, in which Amgen alum who are now at Berkeley for school came to talk to us about their experiences and grad school in general - application process, academic and social life, etc. We got to talk to them afterwards and ask questions, which was definitely helpful in calming fears or getting reassurance about things. Thursday we had a faculty seminar about stem cells, and current research on how to get cells to differentiate specifically into neurons. Finally on Friday, we had a faculty networking lunch, in which professors from different departments were invited to lunch with us, and we got to choose who to chat with and had an open conversation. I naturally chose the neuroscience table, and after long introductions for both students and the two professors, the professors told us their backgrounds and what paths they took to get where they are today, and that was pretty much it. Regardless of not getting to talk very much beyond our personal backgrounds and what we're doing here at Berkeley, it was good to network with different faculty than those we see in our research labs every day (though in my case, the neuroscience prof happens to be in the lab next door to mine so I see her sometimes anyway).

Fortunately, my life in California does not only consist of my boring weeks. Before I get into my weekend, I would like to address one thing that I haven't been devoting much blog space to - the actual nature of my research. I believe that I've mentioned I'm studying the function of primary somatosensory cortex, don't remember exactly how much detail I've gone into. The reason for that is, like much scientific research, especially in neuroscience, I'm working with a mammalian animal model. This is bound to bring up many ethical questions about using animal models in research. Even I am still uncomfortable with a lot of the things I observe/have to do on a regular basis to obtain what is necessary for my research. I would prefer not to get into details here where I could cause controversy, which is why I haven't mentioned my research much at all and have more been focusing on my life outside the lab. My current view is that it is an unfortunate necessary evil to use animal models to answer core questions in science, but I'm still in the process of getting used to it because I've never been exposed to it at a level that I'm seeing in my lab here.

Now onto the beginnings of my weekend! Today was one of the huge trips of the summer, Monterey Bay Aquarium + Santa Cruz boardwalk. I was actually fortunate enough to visit Monterey Bay Aquarium for the first time when I was in CA in January, but you can never go there too many times, because it is an AMAZING place. Because of this I actually don't have too many pictures from today's trip, because I was more enjoying than making sure I got a picture of every single thing. There was one new thing for me though - the new jellies exhibit opened after my January visit to the aquarium! Jellies are one of my favorite marine creatures! (like cuttlefish, otters, dolphins, leafy seadragons, and the infinitely long list of favorites I can't pick between).

On the drive to Monterey. The Pacific Ocean is starting
to peek out as we enter Monterey Bay!
Our first top at the aquarium was the seahorse exhibit. Greeting us at first were the seadragons, which I've been lucky to see many times at the New England Aquarium.  Like I mentioned above, seadragons are one of my favorite marine animals!!! They are not seahorses, but are closely related! You really have to see one in action to understand how absolutely beautiful they are.

Woody seadragons! 
Baby seahorse
Leafy seadragons!
The next stop was the new jellies exhibit. I REALLY liked the way they put it together. It was mostly dark with sparkling jelly decorations all over the walls/ceiling. Many fun jellies were featured here and in the other jelly exhibit, in a different section of the aquarium. One thing that we saw which I wish I got a picture of was the section on jelly fluorescent proteins! As a neuroscientist, these are an extremely important discovery which helps us to do cool things like visualize neurons!!! (and that's not even the tip of the iceberg! Basically, fluorescent proteins which we've stolen from marine creatures are now essential to science).

Really awesome jellies :)
Ceiling decorations!
More fun jellies!
They had a giant walk through statue of the rainbow
pattern some jellies make when moving through
the water. Which is my favorite thing to watch
jellies do! 
Here's a jelly making those rainbows!
 Our next stop was the amazing open ocean exhibit. All blue, also in the dark, with several sharks, two turtles, many types of tuna, and various other fish, it gives viewers a stunning view of what life is like in the pelagic zone of the ocean.

Stolen photo from my Jan trip which gives a good
view of the exhibit 
The turtles were hanging out together!
The aquarium has many walkways outside from which you can see all of the hills/mountains across the bay and the beautiful Pacific Ocean. There is also an enormous diversity of seabirds which live in the area. We were actually lucky enough to see an otter swim by when we were walking around outside, but unfortunately I was not able to pull out my camera to get a photo of it. Not only are the view and wildlife incredible, but the ocean itself is just beautiful. Here's a picture I took looking down from the deck. Look at the rich diversity of life! And the patterns the light is making in the water! It's absolutely beautiful.


In between those sections somewhere we also saw the plankton exhibit and the puffin exhibit, but my photos of those are either nonexistant from today or didn't turn out that well. 

Next stop: kelp forest! This is a habitat unique to the west coast, and I think one of the reasons I love Monterey Bay Aquarium so much,  besides the fact that it's inherently awesome, is because I am able to be exposed to types of habitats I never really saw growing up, like giant kelp forests. Of course I'd heard of them and seen them in books, but it's so nice to be able to go to an aquarium and see these types of habitats in person. 

Shark swimming by a kelp
TALL!
Our next stop was the touch pool area and other small kelp areas. The touch pools, besides having kelp, are pretty standard - starfish, crabs, etc. But the one cool thing they did have were shark egg cases! They're actually a very familiar sight, but most people probably don't actually know what they are. This next photo wasn't one we were allowed to touch, it was separated, because if you look closely, there's actually a baby shark growing inside! We could see it moving!


Han and I at the giant kelp forest! 
In the Splash Zone, in addition to there being penguins (which I have no photos of), and besides the other animals like eels and cuttlefish, there are other fun generally kiddy things to do/play with. I do not consider this one of them. It is absolutely age appropriate for us.
Bonnie, me, and Alisa in the giant clam shell.
We barely fit! 
I forced Han to squeeze into the penguin
egg with me. Jacob is playing the role
of crazy parent. 
This is the view from the penguin area!!!!!
 The next destination was the octopus area (the aquarium has TWO Giant Pacific Octopus!!!!!!!!!!!!)

Adjacent to the octopus area is a section on Monterey specific habitats as well as a deep reef. We didn't spend too much time here as we were at that point running very low on time and mostly rushed this area. We did however see one of my favorite things in the aquarium (I know, I have too many favorite things!). One area has an open pool with lots of anemones, tunicates, and other fun colorful things, with floating magnifying glasses you can look at the organisms with. Here's an example of how rich one small section of the pool can be:


This next bunch is stolen from my visit in January, just because I love this exhibit so much and wanted to share it with everyone!





We did also have a small bit of time to go to the nature center / aviary. There were lots of beautiful species of seabirds there, of which I only have one photo, because its head looked the fluffiest out of all the birds we saw. 


After exiting the aviary is a ray touch pool, but the rays weren't being cooperative today so we didn't get to pet any. In this area is also a bit on tide pools, mangroves, and I believe salmon. 

And of course, despite how late we had gotten, we couldn't leave the aquarium without stopping to say hello to the sea otters :)


After a wonderful time at the aquarium, we headed back north and went to the Santa Cruz Boardwalk for a few hours. Somehow I was too busy having a good time and stuffing my face with funnel cake to remember to take any photos (not a huge deal since I feel like it's pretty ordinary for a boardwalk/amusement park), but here are the ones I do have - 

Beautiful view of the ocean. Actually taken from the
peak height of the pirate ship swing ride. I'm a rebel!
View of the boardwalk from outside arcade
Boardwalk entrance
One of the highlights of Santa Cruz Boardwalk though was getting to go to an attraction I'd never been to before or even seen before! It's called the Vault Laser Maze. When convincing my friends to do it with me (I'd looked up the attractions online beforehand and REALLY wanted to do this one), I described it as "you're like a spy in a movie, where the spy has to get through a complicated set of lasers to get to the end of a long hallway to accomplish some goal." Which is basically the goal - you go into a dark room and they activate a set of lasers, and you have to make it to the vault at the end of the room without touching any of the lasers. I as well as 3 other scholars tried it, and let me say that it was AWESOME. Despite it only being a 20-30 ft distance we had to cross (and my choosing the "medium" difficulty level to not be a wimp about choosing easy and being too afraid to choose hard or expert), it was SO MUCH FUN! I think I was actually the only person in my group to not touch a laser on my whole trek across! I had to do ridiculous things like position my head in weird ways while I climbed over lasers, or get flat on my back and limbo my way under a laser super close to the ground, or the reverse and get on my tummy and slowly inch forward under a laser. They actually have a TV set outside hooked up to a video camera, so all your friends can cheer you on while you're in the maze. I heard many a giggle when I would almost hit a laser I didn't see but realize it at the last second, or have to resort to doing funny things like crawl in weird ways, or yell out "HOW AM I SUPPOSED TO PASS THIS PART????"

By the way, in case anyone was wondering, yes, I did step foot in the Pacific Ocean (I don't believe it was my first time), and didn't stay in for more than a few seconds as it's FREEZING. Blame the California Current for that (and also for the completely different marine habitats than the east coast!).

That's essentially it for my updates! Tomorrow, in addition to getting some work done (hopefully!), I hope to explore some of the area a bit, and will be meeting a friend for dinner in the evening so will hopefully get to try a delicious new restaurant!

Sunday, June 17, 2012

Exploring Filled Week and Weekend

There was actually not that much to update on from this past week! Very few eventful things happened during the week, and not so many that I couldn't lump them here with all of the fun weekend updates!


Remember the presentation my PI wanted me to work on starting the week I got here? Well, after much editing and fixing, it was finally finished, and it ended up (of course, I would be surprised if this didn't happen), he wanted me to present it at our Tuesday morning lab meeting. I was of course happy to do so. The presentation I thought went okay, but all my labmates seemed to really take a lot from it, as they all came to me after and told me how great and informative it was!!! It meant a lot and was really great to know that everyone was able to get something out of it and found it useful.


On Thursday mornings, we usually have seminar. Unfortunately, the night before, there was a huge fire in the train system (BART), which meant that everyone was either super late to work or had to drive in on Thursday morning, so our seminar speaker never actually came. We were dismissed from seminar early, and a bunch of us went into the Valley Life Sciences Building to check out all of the different things they have there. It's rather sad sometimes because of the three main professors I wanted to work with, two have labs in Valley Life Science, the other in Life Science Addition? And GUESS WHERE I AM?? But it's okay, because I love my lab. Here are some pictures from VLSB:


Skeleton models! The little one is a domestic cat!
Really cool display of our ancestors! I liked the mirror
part of it! :)
Lucy model
This skeleton likes the tree!
DINOSAUUUUUURRRRRR!
On Friday, several of the other girls wanted to try a new ice cream place! It's called Tara's and it's just down the street from Ici's. A whole group of us went but only a few of us got ice cream. They have really unique flavors which are fantastically pulled off. 



I got toasted almond and orange cashew. Both were absolutely delicious! Other flavors were things like allspice, black sesame, sunflower butter, and butternut squash. VERY different from your typical ice cream flavors, and from what I tasted from what the other girls got, all were extremely tasty and tasted true to their name. I love going to new ice cream places and trying flavors unique to that place. Why get something like chocolate when that's available anywhere? It takes a very special ice cream place to pull off flavors like the ones they had, and they did it so well. 

Saturday we had GA group social activities. I don't actually have many pictures of this, mostly because I slept through breakfast and 2/3 of the activities involved eating, and I was too excited about eating to remember to take pictures.

We first stopped at Cheeseboard, a cheese/pizza specialty place in northern Berkeley. They have a different specialty pizza each day, and Saturday's was Crimini mushroom, Onions, French feta cheese, Mozzarella, Fresh herbs, Garlic olive oil. I cannot even describe how that was one of the best pizzas I've ever eaten. The cheese was just so good, and the ingredients were put together in such a wonderfully perfect way that took my mouth on an incredible journey to pizza bliss. 

We actually took our pizza to a destination to have a picnic. We went to Indian Rock Park, which is literally a giant rock the size of about 2-3 houses in actual backyards in North Berkeley. Once you get off the bus, you take this path up a hill, through the backs of several backyards, and all of a sudden you're met with this giant rock. Since North Berkeley is up in the hills, you have an amazing view from the top. 


Notice the house, right there. We were in
the middle of an actual neighborhood!  
That's how you get up the rock. There are just
some stairs, no big deal.
After eating our pizza and enjoying the view, we went to Lush Gelato on our walk back to Berkeley. I was again too hungry and too busy being a pig to remember to take photos, but the flavors I had were brown sugar rum and salted caramel banana, both of which were very good. Lush had similar flavors to Tara's, some of which included balsamic vinegar and olive oil. Gross when you think about, but very good in an ice cream, so I'm told. 

GA activities didn't take the whole day, so most of us, upon getting back from our respective activities, just vegged out in the dorm for the rest of the day. Later at night, I was bored, and asked one of the other girls if she wanted to try a new food place with me. On the way, we stopped at Walgreens because I needed a few things. Unfortunately, I discovered the candy aisle. Usually I'm good at avoiding the sweets and snacks and sugar, but given that the Walgreens out here have things like Bueno Bars (best foreign chocolate ever), they're bound to have things I can't resist buying because they're either too good or they're never available in the US. Things like these:



I CAN'T WAIT TO EAT THEM.

After the Walgreens detour, we went to our real destination, Crepes A-Go-Go. Probably just as good as the Paris Creperie in Boston but without the Nutella hot chocolate, Crepes A-Go-Go has a great selection of sweet and savory crepes. I got a sweet crepe, the King Lias, which has almonds, bananas, coconut, Nutella, and whipped cream. It's the sweetest one on the menu! I was very happy with it, and it was super tasty! 



Today, Sunday, we went into San Francisco to see Alcatraz! I have actually never been there on my previous trips to San Francisco, so I was very excited! 


Street chalk art outside BART in Berkeley
Sign coming into the island
Dock area. Prison is up on top of the hill 


The main prison 
Cells 
Rows and rows of cells 
The areas of the prison had funky names...like
Times Square...
...and Broadway!
Cell Block D, where solitary
confinement is (though I don't have photos
of that particular section) 
Bonnie (one of the other scholars) and I were
bad and are now in prison together :(.
Famous inmates 
Some of the prisoners oil painted! 
Visitation rules
Visitation area 




Guards office
The view is so pretty!...except that you're in prison.
Dummy heads from successful (?)
escape attempt




This is the utility area the prisoners
escaped from 
This sign was put there just for
people like me.
Bye Alcatraz!
That was the end of Amgen planned activities for the day, but certainly not the end of my adventures! As it turns out, several Govies are currently in the area! When I was a rising senior in high school (Summer 2008), I attended the New Jersey Governor's School in the Sciences. It is the only other "scholars" program I've been to, and probably the best one besides Amgen. I did make true lifelong friends during my time at the program, and it was one of the best three weeks of my life. Govies (our affectionate name for our fellow Gov School scholars) also pop up everywhere in the scientific community especially now that we're all getting settled into a field, and it's great to have so many connections. One of the Govies happened to be in town for a conference this weekend, the other is out here for a summer internship. It was great to get to see them again after so many years and hang out in an awesome city together! They + the one's two labmates who joined us had a combination between them of not having done/been to several of the things we'd done/went to, so it was great to introduce them to it, especially for the conference-ers, who got to do really San Francisco typical things in the short time that they're here! It's great how even though we all have roots in NJ and have gone so many separate ways for school, we still manage to meet up in small groups all over the country and even world whenever several people are in the same area (my personal ones have been in DC and now in SF!). Overall it was just a wonderful afternoon/evening, and truly some of the best times of my life are those spent with my Gov Loves :).


Ronak, me, and Mark after our cable car ride to
Fisherman's Wharf for dinner! Gov loves!  :D
We went to Boudin's for dinner. I found a LOBSTER
sourdough bread!
Me at the Boudin's cafe! 
Bread making area as seen from the museum 
Rules for the cable car. Rules a daredevil
like me of course doesn't want to follow!
Don't worry, the cable car was still stationary
when I was posing for this picture!  
We passed this building on the way back. On the left out
of view are all of the Ivy League school flags.
Not important! The actual one important one is
shown here. Hint: it's NOT Stanford! 
Before going to Boudin's, we actually
stopped at Ghirardelli Square.
Last time I was there,  I told myself
no buying chocolate, since I
had a huge stash in my room
 and didn't need more. Well, that
stash is almost done. So guess
who spent a fortune buying a
ginormous bag of chocolates....
This week, one of the main things I really need to do besides all of my labwork and other general Amgen responsibilities is catch up on my snail mail. I have many a letter or postcard to send to various family/friends, which I have been putting on hold for far too long due to other work or responsibilities or "priorities" (such as writing here...oops). I have several workshops this week as well as the usual GRE prep course. It'll be incredibly busy, but will be well worth getting through as next weekend is the Monterey Bay Aquarium/Santa Cruz trip which I'm ridiculously excited for! Off to face my week!